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SRX22379018: GSM7882745: mig1glu30min+A 3; Cryptococcus neoformans var. grubii H99; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 9.3M spots, 2.8G bases, 1,009.6Mb downloads

Submitted by: NCBI (GEO)
Study: Brain glucose induces tolerance of Cryptococcus neoformans to amphotericin B during meningitis
show Abstracthide Abstract
In bacteria, antibiotic tolerance, the ability of a susceptible population to survive high doses of cidal drugs, has been shown to compromise therapeutic outcomes. In comparison, whether fungicide tolerance can be induced by host-derived factors during fungal diseases remains unproven. Here, through a systematic evaluation of metabolite-drug-fungal interactions in the leading fungal meningitis pathogen, Cryptococcus neoformans, we found that glucose, on which the brain depends for fuel, induces fungal tolerance to amphotericin B (AmB) in mouse brain tissue and patient cerebrospinal fluid via the fungal glucose repression activator Mig1. To explore the mechanisms underlying glucose-dependent AmB tolerance mediated by Mig1, we used time-series RNA-seq to evaluate dynamic gene expression in wildtype and mig1? fungi after exposure to AmB under both drug-tolerant (glucose) or drug-sensitive (galactose) conditions. Overall design: 24 samples contain wild type, mig1?, three replicates
Sample: mig1glu30min+A 3
SAMN38116558 • SRS19426735 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was purified using the Ultrapure RNA Kit. Illumina cDNA libraries were generated using VAHTSTM mRNA-seq v2 Library Prep Kit. Frozen pellets were ground in liquid nitrogen and total RNA was purified using the Ultrapure RNA Kit (Kangweishiji, CW0581S) according to the manufacturer's instructions, and then reverse-transcribed with the Fastquant RT Kit (Tiangen KR106-02, with gDNase). Illumina cDNA libraries were generated using VAHTSTM mRNA-seq v2 Library Prep Kit (Vazyme Biotech Co., Ltd, Nanjing, China) as described by the manufacture. Samples were clustered using VAHRS RNA adapters set1/set2 and then sequenced using Illunima Hiseq 4000 platform in a 2x150 pair-ended manner.
Experiment attributes:
GEO Accession: GSM7882745
Links:
Runs: 1 run, 9.3M spots, 2.8G bases, 1,009.6Mb
Run# of Spots# of BasesSizePublished
SRR266791649,278,9562.8G1,009.6Mb2023-11-08

ID:
30360776

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